56 Publications (Page 2 of 3)
2023
Abstract B097: Molecular disparities between cancer patients with normal weight and excessive body fat. Cancer Epidemiology, Biomarkers & Prevention
. | Journal Article
 
Biological Network Mining
Yue, Zongliang⋅Yan, Da⋅Guo, Guimu and Chen, Jake
Biostatistics Research, vol. 1, pp. 31–59. | Journal Article
 
Biological Network Mining. Biostatistics Research
. | Journal Article
 
Tumor-Associated Macrophage Targeting of Nanomedicines in Cancer Therapy. Pharmaceutics
. | Journal Article
2022
An in vivo model of glioblastoma radiation resistance identifies long noncoding RNAs and targetable kinases. JCI Insight
Stackhouse, CT⋅Anderson, JC⋅Nguyen, T⋅Eustace, NJ⋅Langford, CP⋅Wang, J⋅Rowland IV, JR⋅Xing, C⋅Mikhail, FM⋅Cui, X⋅Alrefai, H⋅Bash, RE⋅Lee, KJ⋅Yang, ES⋅Hjelmeland, AB⋅Ryan Miller, C⋅Chen, Jy⋅Yancey Gillespie, G and Willey, CD
. | Journal Article
 
A nonredundant role for T cell-derived interleukin 22 in antibacterial defense of colonic crypts
Zindl, Carlene L.⋅Witte, Steven J.⋅Laufer, Vincent A.⋅Gao, Min⋅Yue, Zongliang⋅Janowski, Karen M.⋅Cai, Baiyi⋅Frey, Blake F.⋅Silberger, Daniel J.⋅Harbour, Stacey N.⋅Singer, Jeffrey R.⋅Turner, Henrietta⋅Lund, Frances E.⋅Vallance, Bruce A.⋅Rosenberg, Alexander F.⋅Schoeb, Trenton R.⋅Chen, Jake Y.⋅Hatton, Robin D. and Weaver, Casey T.
Immunity, vol. 55, pp. 494–511.e11. | Journal Article
 
DEMA: a distance-bounded energy-field minimization algorithm to model and layout biomolecular networks with quantitative features. Bioinformatics
Weng, Z⋅Zhu, Y and Chen, Jy
. | Journal Article
 
Deploying a Systems Biology Approach to Identify Drivers of Radiation Resistance in Glioblastoma Multiforme (GBM) Patient-Derived Xenograft (PDX) Models. International Journal of Radiation Oncology*Biology*Physics
Lee, KJ⋅Stackhouse, CT⋅Anderson, JC⋅Bash, R⋅Nguyen, T⋅Eustace, NJ⋅Ianov, L⋅Langford, CP⋅Wang, J⋅Xing, C⋅Yang, ES⋅Hjelmeland, AB⋅Miller, CR⋅Chen, Jy⋅Gillespie, GY and Willey, C
. | Journal Article
 
PAGER Web APP: An Interactive, Online Gene Set and Network Interpretation Tool for Functional Genomics
Yue, Zongliang⋅Slominski, Radomir⋅Bharti, Samuel and Chen, Jake Y.
Frontiers in Genetics, vol. 13. | Journal Article
 
WINNER: A network biology tool for biomolecular characterization and prioritization.
Nguyen, Thanh⋅Yue, Zongliang⋅Slominski, Radomir⋅Welner, Robert⋅Zhang, Jianyi and Chen, Jake Y
Frontiers in big data, vol. 5, pp. 1016606, 2022. | Journal Article
2021
Biological Network Mining.
Yue, Zongliang⋅Yan, Da⋅Guo, Guimu and Chen, Jake Y
Methods in molecular biology (Clifton, N.J.), vol. 2328, pp. 139-151, 2021. | Journal Article
 
Corrigendum: Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples
Nguyen, Thanh M.⋅Bharti, Samuel⋅Yue, Zongliang⋅Willey, Christopher D. and Chen, Jake Y.
Frontiers in Big Data, vol. 4. | Journal Article
 
Metabolic alterations mediated by STAT3 promotes drug persistence in CML.
Patel, Sweta B⋅Patel, SB⋅Patel, Sweta B⋅Patel, Sweta B⋅Patel, Sweta B⋅Patel, Sweta B.⋅Nemkov, Travis⋅⋅⋅⋅Stefanoni, Davide⋅Benavides, Gloria A⋅Benavides, Gloria A⋅Benavides, GA⋅Benavides, Gloria A.⋅Benavides, Gloria A⋅Benavides, Gloria A⋅Bassal, Mahmoud A.⋅Bassal, MA⋅Bassal, Mahmoud A⋅Bassal, Mahmoud A⋅Bassal, Mahmoud A⋅Bassal, Mahmoud A⋅Crown, BL⋅Crown, Brittany L.⋅Crown, Brittany L⋅Crown, Brittany L⋅Crown, Brittany L⋅Crown, Brittany L⋅Matkins, Victoria R⋅Matkins, VR⋅Matkins, Victoria R.⋅Matkins, Victoria R⋅Matkins, Victoria R⋅Matkins, Victoria R⋅Camacho, Virginia⋅Camacho, Virginia⋅Camacho, Virginia⋅Camacho, Virginia⋅Camacho, Virginia⋅Camacho, V⋅Kuznetsova, Valeriya⋅Hoang, Ashley T⋅Hoang, Ashley T⋅Hoang, Ashley T⋅Hoang, Ashley T.⋅Hoang, AT⋅Hoang, Ashley T⋅Tenen, Danielle E⋅Tenen, Danielle E.⋅Tenen, Danielle E⋅Tenen, Danielle E⋅Tenen, Danielle E⋅Tenen, DE⋅Wolock, Samuel L.⋅Wolock, Samuel L⋅Wolock, Samuel L⋅Wolock, SL⋅Wolock, Samuel L⋅Wolock, Samuel L⋅Park, J⋅Park, Jihye⋅Park, Jihye⋅Park, Jihye⋅Park, Jihye⋅Park, Jihye⋅Ying, Li⋅Li, Ying⋅Li, Ying⋅Li, Ying⋅Zongliang, Yue⋅Zongliang, Yue⋅Yue, Zongliang⋅Zongliang, Yue⋅Chen, Jake Y⋅Chen, Jake Y⋅Chen, Jake Y⋅Chen, Jake Y⋅Chen, Jy⋅Chen, Jake Y.⋅Yang, Henry⋅Yang, Henry⋅Yang, Henry⋅Yang, H⋅Yang, Henry⋅Yang, Henry⋅Tenen, DG⋅Tenen, Daniel G⋅Tenen, Daniel G⋅Tenen, Daniel G⋅Tenen, Daniel G⋅Tenen, Daniel G.⋅Ferrell, Paul Brent⋅Ferrell, Paul B⋅Ferrell, Paul B⋅Ferrell, PB⋅Ferrell, Paul B⋅Lu, Rui⋅Lu, R⋅Lu, Rui⋅Lu, Rui⋅Lu, Rui⋅Lu, Rui⋅Darley-Usmar, Victor⋅D'Alessandro, Angelo⋅D’Alessandro, Angelo⋅Bhatia, Ravi⋅Bhatia, Ravi⋅Bhatia, Ravi⋅Bhatia, R⋅Bhatia, Ravi⋅Bhatia, Ravi⋅Welner, Robert S.⋅Welner, Robert S⋅Welner, Robert S⋅Welner, Robert S⋅Welner, Robert S and Welner, RS
Leukemia, June 12, 2021. | Journal Article
 
PAGER-CoV: A comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies
Yue, Z.⋅Zhang, E.⋅Xu, C.⋅Khurana, S.⋅Batra, N.⋅Dang, S.D.H.⋅Cimino, J.J. and Chen, J.Y.
Nucleic Acids Research, vol. 49, pp. D589-D599. | Journal Article
 
Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples. Frontiers in Big Data
Nguyen, TM⋅Bharti, S⋅Willey, CD and Chen, Jy
. | Journal Article
2020
Abstract 279: Long non-coding RNAs in glioblastoma tumor recurrence and therapy resistance
Stackhouse, Christian Tyler⋅Rowland, James R.⋅Wang, Jelai⋅Nguyen, Thanh⋅Yue, Zongliang⋅Chen, Jake Y.⋅Ianov, Lara⋅Gillespie, G. Yancey and Willey, Christopher D.
American Association for Cancer Research
 
CBIO-12. THE ROLES OF lncRNAs IN GBM RADIATION RESISTANCE AND TUMOR RECURRENCE
Stackhouse, Christian⋅Rowland, James⋅Anderson, Joshua⋅Wang, Jelai⋅Nguyen, Thanh⋅Yue, Zongliang⋅Chen, Jake⋅Ianov, Lara⋅Gillespie, Yancey and Willey, Christopher
Neuro-Oncology, vol. 22, pp. ii18–ii18. | Journal Article
 
Multi-omic Exploration of Inherent and Acquired Radiation Resistance of Glioblastoma Patient-derived Xenografts
Willey, C.D.⋅Stackhouse, C.T.⋅Rowland, J.R.⋅Langford, C.P.⋅Anderson, J.C.⋅Ianov, L.⋅Yue, Z.⋅Nguyen, T.⋅Hjelmeland, A.B.⋅Chen, J.Y. and Gillespie, G.Y.
International Journal of Radiation Oncology∗Biology∗Physics, vol. 108, pp. S40. | Journal Article
2019
BEERE: a web server for biomedical entity expansion, ranking and explorations
Yue, Z.⋅Willey, C.D.⋅Hjelmeland, A.B. and Chen, J.Y.
Nucleic Acids Research, vol. 47, pp. W578-W586. | Journal Article
 
Graft-Versus-Host Disease–Free Antitumoral Signature After Allogeneic Donor Lymphocyte Injection Identified by Proteomics and Systems Biology
Liu, Xiaowen⋅Liu, Xiaowen⋅Liu, X.⋅Liu, X.⋅Liu, Xiaowen⋅Yue, Z.⋅Yue, Zongliang⋅Yue, Zongliang⋅Yue, Zongliang⋅Yue, Z.⋅Cao, Yimou⋅Cao, Yimou⋅Cao, Y.⋅Cao, Y.⋅Cao, Yimou⋅Taylor, L.⋅Taylor, Lauren⋅Taylor, Lauren⋅Taylor, Lauren⋅Taylor, L.⋅Zhang, Qing⋅Zhang, Q.⋅Zhang, Q.⋅Zhang, Qing⋅Zhang, Qing⋅Choi, S.W.⋅Choi, Sung W.⋅Choi, Sung W⋅Choi, S.W.⋅Choi, Sung W⋅Hanash, S.⋅Hanash, S.⋅Hanash, Samir⋅Hanash, Samir⋅Hanash, Samir⋅Ito, S.⋅Ito, Sawa⋅Ito, Sawa⋅Ito, S.⋅Ito, Sawa⋅Chen, J.Y.⋅Chen, Jake Y⋅Chen, Jake Y⋅Chen, Jake Y.⋅Chen, J.Y.⋅Wu, Huanmei⋅Wu, H.⋅Wu, H.⋅Wu, Huanmei⋅Wu, Huanmei⋅Paczesny, Sophie⋅Paczesny, S.⋅Paczesny, Sophie⋅Paczesny, S. and Paczesny, Sophie
JCO Precision Oncology, pp. 1–11. | Journal Article
 
WIPER: Weighted in-Path Edge Ranking for biomolecular association networks
Yue, Z.⋅Nguyen, T.⋅Zhang, E.⋅Zhang, J. and Chen, J.Y.
Quantitative Biology, vol. 7, pp. 313-326. | Journal Article
2018
PAGER 2.0: An update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology
Yue, Z.⋅Z, Yue⋅Zheng, Q.⋅Q, Zheng⋅MT, Neylon⋅Neylon, M.T.⋅M, Yoo⋅Yoo, M.⋅Shin, J.⋅J, Shin⋅Zhao, Z.⋅Z, Zhao⋅Tan, A.C.⋅AC, Tan⋅JY, Chen and Chen, J.Y.
Nucleic Acids Research, vol. 46, pp. D668-D676. | Journal Article
 
Super Gene Set Causal Relationship Discovery from Functional Genomics Data
Yue, Z.⋅Neylon, M.T.⋅Nguyen, T.⋅Ratliff, T. and Chen, J.Y.
IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 15, pp. 1991-1998. | Journal Article
2017
Repositioning drugs by targeting network modules: A Parkinson’s disease case study
Yue, Z.⋅Arora, I.⋅Zhang, E.Y.⋅Laufer, V.⋅Bridges, S.L. and Chen, J.Y.
BMC Bioinformatics, vol. 18. | Journal Article
2016
Proteomic Characterization Reveals That MMP-3 Correlates With Bronchiolitis Obliterans Syndrome Following Allogeneic Hematopoietic Cell and Lung Transplantation
Liu, X.⋅Liu, X⋅Yue, Z.⋅Yue, Z⋅Yu, J.⋅Yu, J⋅Daguindau, E⋅Daguindau, E.⋅Kushekhar, K.⋅Kushekhar, K⋅Zhang, Q⋅Zhang, Q.⋅Ogata, Y.⋅Ogata, Y⋅Gafken, P. R.⋅Gafken, P.R.⋅Gafken, P R⋅Inamoto, Y.⋅Inamoto, Y⋅Gracon, A⋅Gracon, A.⋅Wilkes, D S⋅Wilkes, D.S.⋅Wilkes, D. S.⋅Hansen, J.A.⋅Hansen, J. A.⋅Hansen, J A⋅Lee, S. J.⋅Lee, S.J.⋅Lee, S J⋅Chen, J Y⋅Chen, J. Y.⋅Chen, J.Y.⋅Paczesny, S. and Paczesny, S
American Journal of Transplantation, vol. 16, pp. 2342-2351. | Journal Article