32 Publications (Page 2 of 2)
2016
UniCon3D:de novoprotein structure prediction using united-residue conformational search via stepwise, probabilistic sampling
Bhattacharya, Debswapna⋅Bhattacharya, Debswapna⋅Cao, Renzhi⋅Cao, Renzhi⋅Cheng, Jianlin and Cheng, Jianlin
Bioinformatics, vol. 32, (no. 18), pp. 2799, 2016-09-15. | Journal Article
2015
CONFOLD: Residue‐residue contact‐guided ab initio protein folding
Adhikari, Badri⋅Adhikari, Badri⋅Bhattacharya, Debswapna⋅Bhattacharya, Debswapna⋅Cao, Renzhi⋅Cao, Renzhi⋅Cheng, Jianlin and Cheng, Jianlin
Proteins: Structure, Function, and Bioinformatics, vol. 83, (no. 8), pp. 1449, August 2015. | Journal Article
 
De novo protein conformational sampling using a probabilistic graphical model
Bhattacharya, Debswapna⋅Bhattacharya, Debswapna⋅Cheng, Jianlin and Cheng, Jianlin
Scientific reports, vol. 5, (no. 1), pp. 16332, 2015-Nov-06. | Journal Article
 
Large-scale model quality assessment for improving protein tertiary structure prediction
Cao, Renzhi⋅Cao, Renzhi⋅Bhattacharya, Debswapna⋅Bhattacharya, Debswapna⋅Adhikari, Badri⋅Adhikari, Badri⋅Li, Jilong⋅Li, Jilong⋅Cheng, Jianlin and Cheng, Jianlin
Bioinformatics (Oxford, England), vol. 31, (no. 12), pp. i123, 2015-Jun-15. | Journal Article
2014
The MULTICOM protein tertiary structure prediction system
Li, Jilong⋅Li, Jilong⋅Bhattacharya, Debswapna⋅Bhattacharya, Debswapna⋅Cao, Renzhi⋅Cao, Renzhi⋅Adhikari, Badri⋅Adhikari, Badri⋅Deng, Xin⋅Deng, Xin⋅Eickholt, Jesse⋅Eickholt, Jesse⋅Cheng, Jianlin and Cheng, Jianlin
Methods in molecular biology (Clifton, N.J.), vol. 1137, pp. 41, 2014-00-00. | Journal Article
2013
3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic‐level energy minimization
Bhattacharya, Debswapna⋅Bhattacharya, Debswapna⋅Cheng, Jianlin and Cheng, Jianlin
Proteins: Structure, Function, and Bioinformatics, vol. 81, (no. 1), pp. 131, January 2013. | Journal Article
 
i3Drefine Software for Protein 3D Structure Refinement and Its Assessment in CASP10
Bhattacharya, Debswapna⋅Bhattacharya, Debswapna⋅Cheng, Jianlin and Cheng, Jianlin
PloS one, vol. 8, (no. 7), pp. e69648, 2013-00-00. | Journal Article